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Published in Ecology and Evolution, 2020
This paper is about the population genomics of Isocladus armatus across both large and small spatial scales in New Zealand.
Recommended citation: Population structure and dispersal across small and large spatial scales in a direct developing marine isopod William S. Pearman, Sarah J. Wells, Olin K. Silander, Nikki E. Freed, James Dale 2020.03.01.971333; doi: https://doi.org/10.1101/2020.03.01.971333 https://onlinelibrary.wiley.com/doi/full/10.1002/ece3.6802
Published in Scientific Data, 2020
This paper describes the MARES pipeline and database, developed for easy generation of custom COI databases to aid in metabarcoding.
Recommended citation: Arranz, V., Pearman, W.S., Aguirre, J.D. et al. MARES, a replicable pipeline and curated reference database for marine eukaryote metabarcoding. Sci Data 7, 209 (2020). https://doi.org/10.1038/s41597-020-0549-9 https://www.nature.com/articles/s41597-020-0549-9
Published in BMC Bioinformatics, 2020
This paper is about the benefits of long read vs short read metagenomics in inferring community comosition using simulated reads.
Recommended citation: Pearman, W.S., Freed, N.E. & Silander, O.K. Testing the advantages and disadvantages of short- and long- read eukaryotic metagenomics using simulated reads. BMC Bioinformatics 21, 220 (2020). https://doi.org/10.1186/s12859-020-3528-4 https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-3528-4/
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Undergraduate course, University 1, Department, 2014
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Workshop, University 1, Department, 2015
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